[ 原始碼： jellyfish ]
套件：jellyfish（2.3.0-15 以及其他的）
jellyfish 的相關連結
Debian 的資源：
下載原始碼套件 jellyfish：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Shaun Jackman (QA 頁面)
- Andreas Tille (QA 頁面)
- Michael R. Crusoe (QA 頁面)
- Étienne Mollier (QA 頁面)
外部的資源：
- 主頁 [github.com]
相似套件：
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
其他與 jellyfish 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-15+b3)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
下載 jellyfish
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| amd64 | 2.3.0-15+b3 | 770。4 kB | 2，475。0 kB | [檔案列表] |
| arm64 | 2.3.0-15+b3 | 688。6 kB | 2，379。0 kB | [檔案列表] |
| armel | 2.3.0-15+b3 | 636。7 kB | 1，849。0 kB | [檔案列表] |
| armhf | 2.3.0-15+b3 | 661。8 kB | 1，433。0 kB | [檔案列表] |
| i386 | 2.3.0-15+b3 | 754。7 kB | 2，261。0 kB | [檔案列表] |
| mips64el | 2.3.0-15+b3 | 650。1 kB | 3，144。0 kB | [檔案列表] |
| ppc64el | 2.3.0-15+b3 | 734。9 kB | 2，955。0 kB | [檔案列表] |