套件：maffilter（1.3.1+dfsg-2 以及其他的）

maffilter 的相關連結

Debian 的資源：

下載原始碼套件 maffilter：

維護小組：

外部的資源：

主頁 [jydu.github.io]

相似套件：

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他與 maffilter 有關的套件

依賴

推薦

建議

增強

dep: libboost-iostreams1.74.0 (>= 1.74.0)

Boost.Iostreams Library
dep: libbpp-core4 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.1.3) [i386]

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.2) [mips64el, mipsel, s390x]

dep: libc6 (>= 2.4) [armel, armhf]
dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

GCC 支援函式庫

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libstdc++6 (>= 5.2) [armel, armhf]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 9) [除 armel, armhf]

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

下載 maffilter

下載可用於所有硬體架構的
硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1.3.1+dfsg-2+b1	255。5 kB	1，321。0 kB	[檔案列表]
arm64	1.3.1+dfsg-2+b1	235。9 kB	1，281。0 kB	[檔案列表]
armel	1.3.1+dfsg-2+b1	218。3 kB	1，148。0 kB	[檔案列表]
armhf	1.3.1+dfsg-2+b1	223。5 kB	1，020。0 kB	[檔案列表]
i386	1.3.1+dfsg-2+b1	262。6 kB	1，300。0 kB	[檔案列表]
mips64el	1.3.1+dfsg-2+b1	220。0 kB	1，456。0 kB	[檔案列表]
mipsel	1.3.1+dfsg-2+b1	222。4 kB	1，385。0 kB	[檔案列表]
ppc64el	1.3.1+dfsg-2+b1	254。2 kB	1，433。0 kB	[檔案列表]
s390x	1.3.1+dfsg-2+b1	234。7 kB	1，333。0 kB	[檔案列表]