Paket: maffilter (1.3.1+dfsg-2 och andra)
Länkar för maffilter
Debianresurser:
Hämta källkodspaketet maffilter:
- [maffilter_1.3.1+dfsg-2.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-2.debian.tar.xz]
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Andreas Tille (QA-sida)
- Julien Dutheil (QA-sida)
- Pranav Ballaney (QA-sida)
Externa resurser:
- Hemsida [jydu.github.io]
Liknande paket:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
Andra paket besläktade med maffilter
|
|
|
|
-
- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
-
- dep: libbpp-core4 (>= 2.4.1)
- Bio++ Core library
-
- dep: libbpp-phyl-omics3 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
-
- dep: libbpp-phyl12 (>= 2.4.1)
- Bio++ Phylogenetic library
-
- dep: libbpp-seq-omics3 (>= 2.4.1)
- Bio++ Sequence library: genomics components
-
- dep: libbpp-seq12 (>= 2.4.1)
- Bio++ Sequence library
-
- dep: libc6 (>= 2.1.3) [i386]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.14) [amd64]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.2) [mips64el, mipsel, s390x]
- dep: libc6 (>= 2.4) [armel, armhf]
-
- dep: libgcc-s1 (>= 3.0) [ej armel, armhf]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 9) [ej armel, armhf]
-
- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)
Hämta maffilter
Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|---|
amd64 | 1.3.1+dfsg-2+b1 | 255,5 kbyte | 1.321,0 kbyte | [filförteckning] |
arm64 | 1.3.1+dfsg-2+b1 | 235,9 kbyte | 1.281,0 kbyte | [filförteckning] |
armel | 1.3.1+dfsg-2+b1 | 218,3 kbyte | 1.148,0 kbyte | [filförteckning] |
armhf | 1.3.1+dfsg-2+b1 | 223,5 kbyte | 1.020,0 kbyte | [filförteckning] |
i386 | 1.3.1+dfsg-2+b1 | 262,6 kbyte | 1.300,0 kbyte | [filförteckning] |
mips64el | 1.3.1+dfsg-2+b1 | 220,0 kbyte | 1.456,0 kbyte | [filförteckning] |
mipsel | 1.3.1+dfsg-2+b1 | 222,4 kbyte | 1.385,0 kbyte | [filförteckning] |
ppc64el | 1.3.1+dfsg-2+b1 | 254,2 kbyte | 1.433,0 kbyte | [filförteckning] |
s390x | 1.3.1+dfsg-2+b1 | 234,7 kbyte | 1.333,0 kbyte | [filförteckning] |