[ 源代码： ariba ]
软件包：ariba（2.14.6+ds-1 以及其他的）
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
其他与 ariba 有关的软件包
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- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [mips64el]
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- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
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- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- sug: spades
- genome assembler for single-cell and isolates data sets