软件包：bali-phy（3.6.0+dfsg-1）

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外部的资源：

主页 [www.bali-phy.org]

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Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

其他与 bali-phy 有关的软件包

依赖

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建议

增强

dep: libboost-chrono1.74.0 (>= 1.74.0)

C++ representation of time duration, time point, and clocks
dep: libboost-filesystem1.74.0 (>= 1.74.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-program-options1.74.0 (>= 1.74.0)

program options library for C++
dep: libboost-random1.74.0 (>= 1.74.0)

Boost Random Number Library
dep: libc6 (>= 2.29)

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
dep: libcairo2 (>= 1.4.10)

Cairo 2D vector graphics library
dep: libgcc-s1 (>= 3.0) [s390x]

GCC 支持库

dep: libgcc-s1 (>= 3.4) [amd64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
dep: libstdc++6 (>= 9)

GNU 标准 C++ 库，第3版
dep: perl

拉里沃尔的实用报表提取语言(Perl)
dep: python3

交互式高级面向对象语言（默认 python3 版本）

rec: gnuplot

Command-line driven interactive plotting program.
同时作为一个虚包由这些包填实： gnuplot-nox, gnuplot-qt, gnuplot-x11
rec: r-base

GNU R statistical computation and graphics system

sug: figtree

graphical phylogenetic tree viewer
sug: seaview

Multiplatform interface for sequence alignment and phylogeny

下载 bali-phy

下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
amd64	6,034.2 kB	35,682.0 kB	[文件列表]
arm64	5,431.3 kB	32,438.0 kB	[文件列表]
armel	4,564.5 kB	29,752.0 kB	[文件列表]
armhf	4,260.7 kB	22,024.0 kB	[文件列表]
i386	5,831.4 kB	35,044.0 kB	[文件列表]
mips64el	5,573.4 kB	42,247.0 kB	[文件列表]
mipsel	5,537.4 kB	40,464.0 kB	[文件列表]
ppc64el	6,131.2 kB	40,892.0 kB	[文件列表]
s390x	4,991.8 kB	35,522.0 kB	[文件列表]