Paket: r-bioc-grohmm (1.40.3-2)

r-bioc-grohmm için bağlantılar

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Ana Sayfa [bioconductor.org]

Benzer paketler:

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

r-bioc-grohmm ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.17) [arm64, ppc64el]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.4) [amd64, mips64el, s390x]
dep: r-api-4.0

sanal paketi sağlayan r-base-core
dep: r-api-bioc-3.20

sanal paketi sağlayan r-bioc-biocgenerics
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.15.6)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicranges (>= 1.31.8)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rtracklayer (>= 1.39.7)

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.17.25)

BioConductor S4 implementation of vectors and lists
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-edger

Empirical analysis of digital gene expression data in R
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-org.hs.eg.db

genome-wide annotation for Human

r-bioc-grohmm indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	4.350,3 kB	4.521,0 kB	[dosya listesi]
arm64	4.348,4 kB	4.529,0 kB	[dosya listesi]
mips64el	4.348,4 kB	4.532,0 kB	[dosya listesi]
ppc64el	4.353,9 kB	4.529,0 kB	[dosya listesi]
riscv64	4.349,9 kB	4.505,0 kB	[dosya listesi]
s390x	4.351,5 kB	4.521,0 kB	[dosya listesi]