[ Källkod: r-bioc-grohmm ]
Paket: r-bioc-grohmm (1.40.3-2)
Länkar för r-bioc-grohmm
Debianresurser:
Hämta källkodspaketet r-bioc-grohmm:
- [r-bioc-grohmm_1.40.3-2.dsc]
- [r-bioc-grohmm_1.40.3.orig.tar.gz]
- [r-bioc-grohmm_1.40.3-2.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [bioconductor.org]
Liknande paket:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
Andra paket besläktade med r-bioc-grohmm
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- dep: libc6 (>= 2.17) [arm64, ppc64el]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.4) [amd64, mips64el, s390x]
-
- dep: r-api-4.0
- virtuellt paket som tillhandahålls av r-base-core
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- dep: r-api-bioc-3.20
- virtuellt paket som tillhandahålls av r-bioc-biocgenerics
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- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
-
- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer (>= 1.39.7)
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
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- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
Hämta r-bioc-grohmm
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 4.350,3 kbyte | 4.521,0 kbyte | [filförteckning] |
| arm64 | 4.348,4 kbyte | 4.529,0 kbyte | [filförteckning] |
| mips64el | 4.348,4 kbyte | 4.532,0 kbyte | [filförteckning] |
| ppc64el | 4.353,9 kbyte | 4.529,0 kbyte | [filförteckning] |
| riscv64 | 4.349,9 kbyte | 4.505,0 kbyte | [filförteckning] |
| s390x | 4.351,5 kbyte | 4.521,0 kbyte | [filförteckning] |