Paket: pynast (1.2.2-4)

pynast için bağlantılar

Debian Kaynakları:

pynast Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [github.com]

Benzer paketler:

alignment of short DNA sequences

The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.

Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.

pynast ile İlgili Diğer Paketler

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enhances

dep: libjs-jquery

JavaScript library for dynamic web applications
dep: libjs-underscore

JavaScript's functional programming helper library
dep: python

interactive high-level object-oriented language (Python2 version)

dep: python (<< 2.8)

dep: python (>= 2.7)

rec: blast2

transitional dummy package to ncbi-blast+-legacy
rec: clustalw

global multiple nucleotide or peptide sequence alignment
rec: mafft

Multiple alignment program for amino acid or nucleotide sequences
rec: muscle

Multiple alignment program of protein sequences
rec: python-mpi4py

bindings of the Message Passing Interface (MPI) standard

sug: uclust

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	79,7 kB	302,0 kB	[dosya listesi]