Pakiet: pynast (1.2.2-4)

Odnośniki dla pynast

Zasoby systemu Debian:

Pobieranie pakietu źródłowego pynast:

Opiekunowie:

Debian Med Packaging Team (Strona QA, Archiwum e-mail)
Steffen Moeller (Strona QA)
Andreas Tille (Strona QA)
Tim Booth (Strona QA)

Zasoby zewnętrzne:

Strona internetowa [github.com]

Podobne pakiety:

alignment of short DNA sequences

The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.

Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.

Inne pakiety związane z pynast

wymaga

poleca

sugeruje

enhances

dep: libjs-jquery

JavaScript library for dynamic web applications
dep: libjs-underscore

JavaScript's functional programming helper library
dep: python

Interaktywny, wysokopoziomowy język obiektowy (wersja Python2)

dep: python (<< 2.8)

dep: python (>= 2.7)

rec: blast2

transitional dummy package to ncbi-blast+-legacy
rec: clustalw

global multiple nucleotide or peptide sequence alignment
rec: mafft

Multiple alignment program for amino acid or nucleotide sequences
rec: muscle

Multiple alignment program of protein sequences
rec: python-mpi4py

bindings of the Message Passing Interface (MPI) standard

sug: uclust

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Pobieranie pynast

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