Paket: jellyfish (2.3.0-10)

jellyfish için bağlantılar

Debian Kaynakları:

jellyfish Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [www.cbcb.umd.edu]

Benzer paketler:

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

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bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (= 2.3.0-10)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 9)

GNU Standard C++ Library v3

jellyfish indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
ppc64el	739,1 kB	2.957,0 kB	[dosya listesi]