Paket: python3-dna-jellyfish (2.3.1-3 och andra)

Länkar för python3-dna-jellyfish

Debianresurser:

Hämta källkodspaketet jellyfish:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Shaun Jackman (QA-sida)
Andreas Tille (QA-sida)
Michael R. Crusoe (QA-sida)
Étienne Mollier (QA-sida)

Externa resurser:

Hemsida [www.genome.umd.edu]

Liknande paket:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andra paket besläktade med python3-dna-jellyfish

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.34) [ej ia64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libc6.1 (>= 2.31) [ia64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
dep: libgcc-s1 (>= 3.0) [ej hppa, ia64, riscv64]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.4) [riscv64]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC stödbibliotek
dep: libjellyfish-2.0-2 (>= 2.3.0) [ia64]

count k-mers in DNA sequences (dynamic library of jellyfish)

dep: libjellyfish-2.0-2 (>= 2.3.1) [ej ia64]
dep: libstdc++6 (>= 13.1) [ej ia64]

GNU standardbibliotek v3 för C++

dep: libstdc++6 (>= 9) [ia64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10) [ia64]

dep: python3 (<< 3.13) [ej ia64]

dep: python3 (>= 3.11~) [ej ia64]

dep: python3 (>= 3.9~) [ia64]

Hämta python3-dna-jellyfish

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.3.1-3+b4	65,1 kbyte	326,0 kbyte	[filförteckning]
arm64	2.3.1-3+b4	62,5 kbyte	438,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	2.3.1-2+b1	74,2 kbyte	384,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	2.3.0-12	67,0 kbyte	280,0 kbyte	[filförteckning]
mips64el	2.3.1-3+b4	60,0 kbyte	452,0 kbyte	[filförteckning]
ppc64el	2.3.1-3+b4	66,7 kbyte	438,0 kbyte	[filförteckning]
riscv64	2.3.1-3+b4	68,2 kbyte	286,0 kbyte	[filförteckning]