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[ Källkod: seaview  ]

Paket: seaview (1:4.7-1)

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Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, implemented-in::c++, User Interface: Command Line, interface::graphical, interface::x11, Networking: Client, Network Protocol: Behöver ett märke till, Role: role::program, scope::utility, Interface Toolkit: FLTK, Purpose: Behöver ett märke till, use::comparing, use::editing, Printing, use::viewing, works-with-format::plaintext, Works with: works-with::biological-sequence, x11::application

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Arkitektur Paketstorlek Installerad storlek Filer
amd64 340,5 kbyte849,0 kbyte [filförteckning]
arm64 313,1 kbyte821,0 kbyte [filförteckning]
armhf 289,8 kbyte579,0 kbyte [filförteckning]
i386 357,7 kbyte899,0 kbyte [filförteckning]