[ Källkod: ugene ]
Paket: ugene (34.0+dfsg-2) [non-free]
Länkar för ugene
Debianresurser:
Hämta källkodspaketet ugene:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Steffen Moeller (QA-sida)
- Andreas Tille (QA-sida)
- Olivier Sallou (QA-sida)
Externa resurser:
- Hemsida [ugene.unipro.ru]
Liknande paket:
integrated bioinformatics toolkit
Unipro UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most important bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data. One of the main features of UGENE is a designer for custom bioinformatics workflows.
Andra paket besläktade med ugene
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- dep: libc6 (>= 2.30)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC stödbibliotek
-
- dep: libgl1
- Vendor neutral GL dispatch library -- legacy GL support
-
- dep: libglu1-mesa
- Mesa OpenGL utility library (GLU)
- eller libglu1
- virtuellt paket som tillhandahålls av libglu1-mesa
-
- dep: libqt5core5a (>= 5.15.1)
- Qt 5 core module
-
- dep: libqt5gui5 (>= 5.14.1)
- Qt 5 GUI module
- eller libqt5gui5-gles (>= 5.14.1)
- Qt 5 GUI module — OpenGL ES variant
-
- dep: libqt5network5 (>= 5.0.2)
- Qt 5 network module
-
- dep: libqt5opengl5 (>= 5.0.2)
- Qt 5 OpenGL module
-
- dep: libqt5printsupport5 (>= 5.0.2)
- Qt 5 print support module
-
- dep: libqt5script5 (>= 5.6.0~beta)
- Qt 5 script module
-
- dep: libqt5scripttools5 (>= 5.6.0~beta)
- Qt 5 script tools module
-
- dep: libqt5sql5 (>= 5.0.2)
- Qt 5 SQL module
-
- dep: libqt5svg5 (>= 5.6.0~beta)
- Qt 5 SVG module
-
- dep: libqt5test5 (>= 5.6.0~beta)
- Qt 5 test module
-
- dep: libqt5webchannel5 (>= 5.6.1)
- Web communication library for Qt
-
- dep: libqt5webenginewidgets5 (>= 5.14.1)
- Web content engine library for Qt - Widget
-
- dep: libqt5websockets5 (>= 5.6.0)
- Qt 5 Web Sockets module
-
- dep: libqt5widgets5 (>= 5.15.1)
- Qt 5 widgets module
-
- dep: libqt5xml5 (>= 5.1.0)
- Qt 5 XML module
-
- dep: libsqlite3-0 (>= 3.7.11)
- SQLite 3 shared library
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- dep: libstdc++6 (>= 9)
- GNU standardbibliotek v3 för C++
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- dep: ugene-data
- required data for UGENE - integrated bioinformatics toolkit
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- dep: zlib1g (>= 1:1.2.3.3)
- Kompressionsbibliotek - körtidspaket
-
- rec: bedtools
- suite of utilities for comparing genomic features
-
- rec: bowtie
- Ultrafast memory-efficient short read aligner
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- rec: bowtie2
- ultrafast memory-efficient short read aligner
-
- rec: bwa
- Burrows-Wheeler Aligner
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- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- rec: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- rec: fastqc
- quality control for high throughput sequence data
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- rec: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- rec: hmmer
- profile hidden Markov models for protein sequence analysis
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- rec: hmmer2
- profile hidden Markov models for protein sequence analysis
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: kraken
- assigning taxonomic labels to short DNA sequences
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- rec: macs
- Model-based Analysis of ChIP-Seq on short reads sequencers
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: mrbayes
- Bayesian Inference of Phylogeny
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- rec: r-base
- GNU R statistical computation and graphics system
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: spades
- genome assembler for single-cell and isolates data sets
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- rec: vcftools
- Collection of tools to work with VCF files
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq
Hämta ugene
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 16.464,7 kbyte | 59.996,0 kbyte | [filförteckning] |