Paket: spades (3.13.1+dfsg-2 och andra)

Länkar för spades

Debianresurser:

Hämta källkodspaketet spades:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Andreas Tille (QA-sida)
Sascha Steinbiss (QA-sida)
Michael R. Crusoe (QA-sida)
Alexandre Mestiashvili (QA-sida)

Externa resurser:

Hemsida [cab.spbu.ru]

Liknande paket:

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c++, Implemented in: Python, User Interface: interface::commandline, role::program, Scope: Utility, Works with: works-with::biological-sequence, works-with::file

Andra paket besläktade med spades

beror

rekommenderar

föreslår

enhances

dep: bamtools

toolkit for manipulating BAM (genome alignment) files
dep: bwa

Burrows-Wheeler Aligner
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libgcc-s1 (>= 4.0)

GCC stödbibliotek
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhat-trie0

HAT-trie, an extremely efficient (space and time) modern variant of tries
dep: libnlopt0 (>= 2.6.1)

nonlinear optimization library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 9)

GNU standardbibliotek v3 för C++
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-distutils

distutils package for Python 3.x
dep: python3-joblib

tools to provide lightweight pipelining in Python
dep: python3-yaml

YAML parser and emitter for Python3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.3.3)

Kompressionsbibliotek - körtidspaket

Hämta spades

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	3.13.1+dfsg-2+b2	4.664,7 kbyte	22.622,0 kbyte	[filförteckning]