[ Källkod: sga ]
Paket: sga (0.10.15-5)
Länkar för sga
Debianresurser:
Hämta källkodspaketet sga:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Michael R. Crusoe (QA-sida)
- Andreas Tille (QA-sida)
Externa resurser:
- Hemsida [github.com]
Liknande paket:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Andra paket besläktade med sga
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.29)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc1 (>= 1:3.0) [amd64, arm64, mips64el, ppc64el]
- Paketet inte tillgängligt
- dep: libgcc1 (>= 1:3.5) [armel, armhf]
- dep: libgcc1 (>= 1:4.2) [mipsel]
- dep: libgcc1 (>= 1:7) [i386]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 9)
- GNU standardbibliotek v3 för C++
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- Kompressionsbibliotek - körtidspaket
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- rec: abyss (>= 2.0.2-1)
- de novo, parallel, sequence assembler for short reads
Hämta sga
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 815,0 kbyte | 2.443,0 kbyte | [filförteckning] |
| arm64 | 591,0 kbyte | 1.747,0 kbyte | [filförteckning] |
| armel | 573,9 kbyte | 1.710,0 kbyte | [filförteckning] |
| armhf | 603,8 kbyte | 1.258,0 kbyte | [filförteckning] |
| i386 | 878,4 kbyte | 2.634,0 kbyte | [filförteckning] |
| mips64el | 750,3 kbyte | 3.008,0 kbyte | [filförteckning] |
| mipsel | 788,6 kbyte | 2.954,0 kbyte | [filförteckning] |
| ppc64el | 677,1 kbyte | 2.239,0 kbyte | [filförteckning] |