Paket: ariba (2.14.6+ds-1 och andra)

Länkar för ariba

Debianresurser:

Hämta källkodspaketet ariba:

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Externa resurser:

Hemsida [github.com]

Liknande paket:

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, scope::application, Purpose: Analysing

Andra paket besläktade med ariba

beror

rekommenderar

föreslår

enhances

dep: bowtie2 (>= 2.1.0)

ultrafast memory-efficient short read aligner
dep: cd-hit

suite of programs designed to quickly group sequences
dep: fastaq (>= 3.12.0)

FASTA and FASTQ file manipulation tools
dep: libc6 (>= 2.14) [amd64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [mips64el]
dep: libfml0 (>= 0.1-4~)

library for assembling Illumina short reads in small regions
dep: libgcc-s1 (>= 3.0)

GCC stödbibliotek
dep: libminimap0 (>= 0.2)

library for approximate mapping of long biosequences
dep: libstdc++6 (>= 5.2)

GNU standardbibliotek v3 för C++
dep: mash

fast genome and metagenome distance estimation using MinHash
dep: mummer

Efficient sequence alignment of full genomes
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10)

dep: python3 (>= 3.9~)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-bs4

error-tolerant HTML parser for Python 3
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-pymummer (>= 0.10.2)

Python 3 interface to MUMmer
dep: python3-pysam (>= 0.9.1)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-tk

Tkinter - Writing Tk applications with Python 3.x
dep: zlib1g (>= 1:1.1.4)

Kompressionsbibliotek - körtidspaket

sug: spades

genome assembler for single-cell and isolates data sets

Hämta ariba

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.14.6+ds-1+b2	1.910,7 kbyte	20.456,0 kbyte	[filförteckning]
arm64	2.14.6+ds-1+b2	1.906,9 kbyte	20.436,0 kbyte	[filförteckning]
mips64el	2.14.6+ds-1+b2	1.906,5 kbyte	20.457,0 kbyte	[filförteckning]
ppc64el	2.14.6+ds-1+b2	1.907,9 kbyte	20.532,0 kbyte	[filförteckning]