[ Zdroj: plasmidid ]
Balík: plasmidid (1.6.3+dfsg-3)
Odkazy pre plasmidid
Zdroje Debian:
Stiahnuť zdrojový balík plasmidid:
- [plasmidid_1.6.3+dfsg-3.dsc]
- [plasmidid_1.6.3+dfsg.orig.tar.xz]
- [plasmidid_1.6.3+dfsg-3.debian.tar.xz]
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Andreas Tille (Stránka QA)
- Steffen Moeller (Stránka QA)
Externé zdroje:
- Domovská stránka [github.com]
Podobné balíky:
mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.
Ostatné balíky súvisiace s balíkom plasmidid
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- dep: bedtools
- suite of utilities for comparing genomic features
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: circos
- plotter for visualizing data
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: prokka
- rapid annotation of prokaryotic genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-numpy
- schopnosti rýchlych polí do jazyka Python 3
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- rec: python3-pandas
- údajové štruktúry „relačných“ dát alebo dát „s označením“
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- rec: spades
- genome assembler for single-cell and isolates data sets
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- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
Stiahnuť plasmidid
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 45.2 kB | 329.0 kB | [zoznam súborov] |