[ Source: plasmidid ]
Paketti: plasmidid (1.6.3+dfsg-3)
Links for plasmidid
Debian-palvelut:
Imuroi lähdekoodipaketti plasmidid:
- [plasmidid_1.6.3+dfsg-3.dsc]
- [plasmidid_1.6.3+dfsg.orig.tar.xz]
- [plasmidid_1.6.3+dfsg-3.debian.tar.xz]
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Steffen Moeller (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.
Muut pakettiin plasmidid liittyvät paketit
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- dep: bedtools
- suite of utilities for comparing genomic features
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: circos
- Plotteri visualisoimaan dataa
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: prokka
- rapid annotation of prokaryotic genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-numpy
- Fast array facility to the Python 3 language
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- rec: python3-pandas
- data structures for "relational" or "labeled" data
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- rec: spades
- genome assembler for single-cell and isolates data sets
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- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data
Imuroi plasmidid
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 45.2 kt | 329.0 kt | [tiedostoluettelo] |