[ Zdroj: maffilter ]
Balík: maffilter (1.3.1+dfsg-4)
Odkazy pre maffilter
Zdroje Debian:
Stiahnuť zdrojový balík maffilter:
- [maffilter_1.3.1+dfsg-4.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-4.debian.tar.xz]
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Andreas Tille (Stránka QA)
- Julien Dutheil (Stránka QA)
- Pranav Ballaney (Stránka QA)
Externé zdroje:
- Domovská stránka [jydu.github.io]
Podobné balíky:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
Ostatné balíky súvisiace s balíkom maffilter
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- knižnica Boost.Iostreams
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- dep: libbpp-core4 (>= 2.4.1)
- Bio++ Core library
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- dep: libbpp-phyl-omics3 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
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- dep: libbpp-phyl12 (>= 2.4.1)
- Bio++ Phylogenetic library
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- dep: libbpp-seq-omics3 (>= 2.4.1)
- Bio++ Sequence library: genomics components
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- dep: libbpp-seq12 (>= 2.4.1)
- Bio++ Sequence library
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- dep: libc6 (>= 2.34)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [nie armel, armhf]
- podporná knižnica GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 11)
- štandardná knižnica C++ GNU v3
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)
Stiahnuť maffilter
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 254.0 kB | 1,312.0 kB | [zoznam súborov] |
| arm64 | 233.3 kB | 1,304.0 kB | [zoznam súborov] |
| armel | 215.3 kB | 1,175.0 kB | [zoznam súborov] |
| armhf | 221.0 kB | 1,047.0 kB | [zoznam súborov] |
| i386 | 260.8 kB | 1,291.0 kB | [zoznam súborov] |
| mips64el | 219.1 kB | 1,488.0 kB | [zoznam súborov] |
| mipsel | 220.3 kB | 1,413.0 kB | [zoznam súborov] |
| ppc64el | 252.9 kB | 1,432.0 kB | [zoznam súborov] |
| s390x | 231.5 kB | 1,324.0 kB | [zoznam súborov] |