[ Source: maffilter ]
Package: maffilter (1.3.1+dfsg-4)
Links for maffilter
Debian Resources:
Download Source Package maffilter:
- [maffilter_1.3.1+dfsg-4.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-4.debian.tar.xz]
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Andreas Tille (QA Page)
- Julien Dutheil (QA Page)
- Pranav Ballaney (QA Page)
External Resources:
- Homepage [jydu.github.io]
Similar packages:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
Other Packages Related to maffilter
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
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- dep: libbpp-core4 (>= 2.4.1)
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- dep: libbpp-phyl-omics3 (>= 2.4.1)
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- dep: libbpp-phyl12 (>= 2.4.1)
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- dep: libc6 (>= 2.34)
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also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf]
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- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 11)
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)
Download maffilter
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 254.0 kB | 1,312.0 kB | [list of files] |
| arm64 | 233.3 kB | 1,304.0 kB | [list of files] |
| armel | 215.3 kB | 1,175.0 kB | [list of files] |
| armhf | 221.0 kB | 1,047.0 kB | [list of files] |
| i386 | 260.8 kB | 1,291.0 kB | [list of files] |
| mips64el | 219.1 kB | 1,488.0 kB | [list of files] |
| mipsel | 220.3 kB | 1,413.0 kB | [list of files] |
| ppc64el | 252.9 kB | 1,432.0 kB | [list of files] |
| s390x | 231.5 kB | 1,324.0 kB | [list of files] |