Pakiet: progressivemauve (1.2.0+4713+dfsg-5 i inne)

Odnośniki dla progressivemauve

Zasoby systemu Debian:

Pobieranie pakietu źródłowego progressivemauve:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [darlinglab.org]

Podobne pakiety:

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Inne pakiety związane z progressivemauve

wymaga

poleca

sugeruje

enhances

dep: libboost-filesystem1.74.0 (>= 1.74.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.74.0 (>= 1.74.0)

Biblioteka Boost.Iostreams
dep: libboost-program-options1.74.0 (>= 1.74.0)

program options library for C++
dep: libc6 (>= 2.29)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

Biblioteka wspomagająca GCC

dep: libgcc-s1 (>= 3.4) [amd64, mips64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libgenome0 (>= 1.3.11+svn20110227.4616)

toolkit for developing bioinformatic related software
dep: libmems1 (>= 1.6.0+4725)

library to support DNA string matching and comparative genomics
dep: libstdc++6 (>= 5.2) [armel, armhf]

Standardowa biblioteka GNU C++, wersja 3

dep: libstdc++6 (>= 9) [nie armel, armhf]

enh: mauve-aligner

multiple genome alignment

Pobieranie progressivemauve

Pobierz dla wszystkich dostępnych architektur
Architektura	Wersja	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	1.2.0+4713+dfsg-5+b1	849,1 KiB	5 581,0 KiB	[lista plików]
arm64	1.2.0+4713+dfsg-5+b1	796,5 KiB	5 054,0 KiB	[lista plików]
armel	1.2.0+4713+dfsg-5+b1	651,6 KiB	3 950,0 KiB	[lista plików]
armhf	1.2.0+4713+dfsg-5+b1	646,6 KiB	2 990,0 KiB	[lista plików]
i386	1.2.0+4713+dfsg-5+b1	838,8 KiB	5 370,0 KiB	[lista plików]
mips64el	1.2.0+4713+dfsg-5+b1	811,6 KiB	6 117,0 KiB	[lista plików]
mipsel	1.2.0+4713+dfsg-5+b1	835,7 KiB	6 059,0 KiB	[lista plików]
ppc64el	1.2.0+4713+dfsg-5+b1	886,8 KiB	7 375,0 KiB	[lista plików]
s390x	1.2.0+4713+dfsg-5+b1	736,0 KiB	5 594,0 KiB	[lista plików]