Paketti: progressivemauve (1.2.0+4713+dfsg-5 ja muut)
Links for progressivemauve
Debian-palvelut:
Imuroi lähdekoodipaketti progressivemauve:
- [progressivemauve_1.2.0+4713+dfsg-5.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-5.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [darlinglab.org]
Samankaltaisia paketteja:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Muut pakettiin progressivemauve liittyvät paketit
|
|
|
|
-
- dep: libboost-filesystem1.74.0 (>= 1.74.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams -kirjasto
-
- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
-
- dep: libc6 (>= 2.29)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.4) [amd64, mips64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
-
- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
- toolkit for developing bioinformatic related software
-
- dep: libmems1 (>= 1.6.0+4725)
- library to support DNA string matching and comparative genomics
-
- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardi C++ -kirjasto, versio 3
- dep: libstdc++6 (>= 9) [ei armel, armhf]
-
- enh: mauve-aligner
- multiple genome alignment
Imuroi progressivemauve
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| amd64 | 1.2.0+4713+dfsg-5+b1 | 849.1 kt | 5,581.0 kt | [tiedostoluettelo] |
| arm64 | 1.2.0+4713+dfsg-5+b1 | 796.5 kt | 5,054.0 kt | [tiedostoluettelo] |
| armel | 1.2.0+4713+dfsg-5+b1 | 651.6 kt | 3,950.0 kt | [tiedostoluettelo] |
| armhf | 1.2.0+4713+dfsg-5+b1 | 646.6 kt | 2,990.0 kt | [tiedostoluettelo] |
| i386 | 1.2.0+4713+dfsg-5+b1 | 838.8 kt | 5,370.0 kt | [tiedostoluettelo] |
| mips64el | 1.2.0+4713+dfsg-5+b1 | 811.6 kt | 6,117.0 kt | [tiedostoluettelo] |
| mipsel | 1.2.0+4713+dfsg-5+b1 | 835.7 kt | 6,059.0 kt | [tiedostoluettelo] |
| ppc64el | 1.2.0+4713+dfsg-5+b1 | 886.8 kt | 7,375.0 kt | [tiedostoluettelo] |
| s390x | 1.2.0+4713+dfsg-5+b1 | 736.0 kt | 5,594.0 kt | [tiedostoluettelo] |