Pakket: python-cogent (1.9-14 en anderen) [debports]

Verwijzigingen voor python-cogent

Debian bronnen:

Probleemrapporten

Het bronpakket downloaden:

Niet gevonden

Beheerders:

Externe bronnen:

Homepage [pycogent.org]

Vergelijkbare pakketten:

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Pakketten die python-cogent bieden:

python3-cogent3: framework for genomic biology

Andere aan python-cogent gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.28) [sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.4) [sparc64]
dep: python

Pakket niet beschikbaar

dep: python (<< 2.8)

dep: python (>= 2.7~)
dep: python-matplotlib

Pakket niet beschikbaar
dep: python-numpy (>= 1:1.13.1) [hppa]

Pakket niet beschikbaar

dep: python-numpy (>= 1:1.14.3) [niet hppa]
dep: python-numpy-abi9

Pakket niet beschikbaar

rec: blast2

Pakket niet beschikbaar
rec: cd-hit

suite of programs designed to quickly group sequences
rec: clearcut

extremely efficient phylogenetic tree reconstruction
rec: dialign

Segment-based multiple sequence alignment
rec: muscle

Multiple alignment program of protein sequences

sug: cdbfasta

Constant DataBase indexing and retrieval tools for multi-FASTA files
sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mothur

sequence analysis suite for research on microbiota
sug: parsinsert

Parsimonious Insertion of unclassified sequences into phylogenetic trees
sug: python-cogent-doc

docs for python3-cogent3
sug: rdp-classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
sug: rtax

Classification of sequence reads of 16S ribosomal RNA gene

python-cogent downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
hppa (unofficial port)	1.9-11+b1	2.388,2 kB	7.890,0 kB	[overzicht]
sh4 (unofficial port)	1.9-14	2.420,6 kB	7.527,0 kB	[overzicht]
sparc64 (unofficial port)	1.9-14	2.357,1 kB	7.877,0 kB	[overzicht]