Paketti: python-cogent (1.9-14 ja muut) [debports]

Links for python-cogent

Debian-palvelut:

Vikailmoitukset

Imuroi lähdekoodipaketti :

Ei löytynyt

Ylläpitäjät:

External Resources:

Kotisivu [pycogent.org]

Samankaltaisia paketteja:

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Paketit, jotka toteuttavat paketin python-cogent

python3-cogent3: framework for genomic biology

Muut pakettiin python-cogent liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.28) [sh4]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.4) [sparc64]
dep: python

Paketti ei saatavilla

dep: python (<< 2.8)

dep: python (>= 2.7~)
dep: python-matplotlib

Paketti ei saatavilla
dep: python-numpy (>= 1:1.13.1) [hppa]

Paketti ei saatavilla

dep: python-numpy (>= 1:1.14.3) [ei hppa]
dep: python-numpy-abi9

Paketti ei saatavilla

rec: blast2

Paketti ei saatavilla
rec: cd-hit

suite of programs designed to quickly group sequences
rec: clearcut

extremely efficient phylogenetic tree reconstruction
rec: dialign

Segment-based multiple sequence alignment
rec: muscle

Multiple alignment program of protein sequences

sug: cdbfasta

Constant DataBase indexing and retrieval tools for multi-FASTA files
sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mothur

sequence analysis suite for research on microbiota
sug: parsinsert

Parsimonious Insertion of unclassified sequences into phylogenetic trees
sug: python-cogent-doc

docs for python3-cogent3
sug: rdp-classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
sug: rtax

Classification of sequence reads of 16S ribosomal RNA gene

Imuroi python-cogent

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
hppa (epävirallinen siirros)	1.9-11+b1	2,388.2 kt	7,890.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.9-14	2,420.6 kt	7,527.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.9-14	2,357.1 kt	7,877.0 kt	[tiedostoluettelo]