[ Bron: parsnp ]
Pakket: parsnp (1.2+dfsg-5)
Verwijzigingen voor parsnp
Debian bronnen:
Het bronpakket parsnp downloaden:
Beheerders:
Externe bronnen:
- Homepage [harvest.readthedocs.org]
Vergelijkbare pakketten:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Andere aan parsnp gerelateerde pakketten
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.27)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgcc1 (>= 1:3.0) [niet armhf]
- GCC support bibliotheek
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
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- rec: python-dendropy
- DendroPy Phylogenetic Computing Library (Python 2)