[ Source: parsnp ]
Paketti: parsnp (1.2+dfsg-5)
Links for parsnp
Debian-palvelut:
Imuroi lähdekoodipaketti parsnp:
Ylläpitäjät:
External Resources:
- Kotisivu [harvest.readthedocs.org]
Samankaltaisia paketteja:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Muut pakettiin parsnp liittyvät paketit
|
|
|
|
-
- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- dep: libc6 (>= 2.27)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: libgcc1 (>= 1:3.0) [ei armhf]
- GCC:n apukirjasto
- dep: libgcc1 (>= 1:3.5) [armhf]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
-
- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: phipack
- PHI test and other tests of recombination
-
- dep: python
- interactive high-level object-oriented language (Python2 version)
-
- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
-
- rec: python-dendropy
- DendroPy Phylogenetic Computing Library (Python 2)
Imuroi parsnp
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 516.2 kt | 913.0 kt | [tiedostoluettelo] |
| arm64 | 508.8 kt | 873.0 kt | [tiedostoluettelo] |
| armhf | 492.4 kt | 784.0 kt | [tiedostoluettelo] |
| i386 | 518.4 kt | 920.0 kt | [tiedostoluettelo] |