[ buster ]
[ Source: pynast ]
Paketti: pynast (1.2.2-4)
Links for pynast
Debian-palvelut:
Imuroi lähdekoodipaketti pynast:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Steffen Moeller (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
- Tim Booth (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
alignment of short DNA sequences
The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.
Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
Muut pakettiin pynast liittyvät paketit
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: libjs-underscore
- JavaScript's functional programming helper library
-
- dep: python
- interactive high-level object-oriented language (Python2 version)
- dep: python (<< 2.8)
- dep: python (>= 2.7)
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- rec: blast2
- transitional dummy package to ncbi-blast+-legacy
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: python-mpi4py
- bindings of the Message Passing Interface (MPI) standard
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- sug: uclust
- Paketti ei saatavilla
Imuroi pynast
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 79.7 kt | 302.0 kt | [tiedostoluettelo] |