Paketti: unicycler (0.4.8+dfsg-2)

Links for unicycler

Debian-palvelut:

Imuroi lähdekoodipaketti unicycler:

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Muut pakettiin unicycler liittyvät paketit

depends

recommends

suggests

enhances

dep: bcftools

genomic variant calling and manipulation of VCF/BCF files
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: default-jre

Standard Java or Java compatible Runtime
dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc1 (>= 1:3.0)

Paketti ei saatavilla
dep: libstdc++6 (>= 6)

GNU standardi C++ -kirjasto, versio 3
dep: miniasm

ultrafast de novo assembler for long noisy DNA sequencing reads
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: pilon

automated genome assembly improvement and variant detection tool
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (>= 3~)
dep: python3-setuptools

Python3 Distutils Enhancements
dep: racon

consensus module for raw de novo DNA assembly of long uncorrected reads
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: spades (>= 3.13.1)

genome assembler for single-cell and isolates data sets
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: unicycler-data

hybrid assembly pipeline for bacterial genomes (data package)

Imuroi unicycler

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	861.0 kt	3,532.0 kt	[tiedostoluettelo]