Paketti: progressivemauve (1.2.0+4713+dfsg-5 ja muut)
Links for progressivemauve
Debian-palvelut:
Imuroi lähdekoodipaketti progressivemauve:
- [progressivemauve_1.2.0+4713+dfsg-5.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-5.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [darlinglab.org]
Samankaltaisia paketteja:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Muut pakettiin progressivemauve liittyvät paketit
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- dep: libboost-filesystem1.74.0 (>= 1.74.0+ds1) [x32]
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-filesystem1.83.0 (>= 1.83.0) [ei x32]
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.74.0 (>= 1.74.0+ds1) [x32]
- Boost.Iostreams -kirjasto
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- dep: libboost-iostreams1.83.0 (>= 1.83.0) [ei x32]
- Boost.Iostreams -kirjasto
-
- dep: libboost-program-options1.74.0 (>= 1.74.0+ds1) [x32]
- program options library for C++
-
- dep: libboost-program-options1.83.0 (>= 1.83.0) [ei x32]
- program options library for C++
-
- dep: libboost-system1.83.0 (>= 1.83.0) [sparc64]
- Operating system (e.g. diagnostics support) library
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- dep: libc6 (>= 2.34) [ei alpha, ia64, sh4]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64, sparc64, x32]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC:n apukirjasto
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC:n apukirjasto
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- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
- toolkit for developing bioinformatic related software
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- dep: libmems1 (>= 1.6.0+4725) [alpha, ia64, ppc64, sparc64, x32]
- library to support DNA string matching and comparative genomics
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- dep: libmems1t64 (>= 1.6.0+4725) [ei alpha, ia64, ppc64, sparc64, x32]
- library to support DNA string matching and comparative genomics
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- dep: libmuscle1 (>= 3.7+4565) [sparc64]
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 13.1)
- GNU standardi C++ -kirjasto, versio 3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- enh: mauve-aligner
- multiple genome alignment
Imuroi progressivemauve
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| alpha (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b2 | 892.3 kt | 6,441.0 kt | [tiedostoluettelo] |
| amd64 | 1.2.0+4713+dfsg-5+b3 | 850.6 kt | 5,393.0 kt | [tiedostoluettelo] |
| arm64 | 1.2.0+4713+dfsg-5+b3 | 791.1 kt | 5,774.0 kt | [tiedostoluettelo] |
| armel | 1.2.0+4713+dfsg-5+b3 | 671.7 kt | 3,966.0 kt | [tiedostoluettelo] |
| armhf | 1.2.0+4713+dfsg-5+b3 | 668.8 kt | 3,070.0 kt | [tiedostoluettelo] |
| hppa (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b3 | 939.2 kt | 5,325.0 kt | [tiedostoluettelo] |
| i386 | 1.2.0+4713+dfsg-5+b3 | 842.1 kt | 5,254.0 kt | [tiedostoluettelo] |
| ia64 (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b2 | 1,091.3 kt | 9,489.0 kt | [tiedostoluettelo] |
| m68k (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b3 | 811.2 kt | 5,262.0 kt | [tiedostoluettelo] |
| mips64el | 1.2.0+4713+dfsg-5+b3 | 823.7 kt | 6,838.0 kt | [tiedostoluettelo] |
| ppc64 (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b2 | 852.6 kt | 7,313.0 kt | [tiedostoluettelo] |
| ppc64el | 1.2.0+4713+dfsg-5+b3 | 877.5 kt | 6,863.0 kt | [tiedostoluettelo] |
| riscv64 | 1.2.0+4713+dfsg-5+b3 | 939.3 kt | 4,687.0 kt | [tiedostoluettelo] |
| s390x | 1.2.0+4713+dfsg-5+b3 | 729.4 kt | 5,366.0 kt | [tiedostoluettelo] |
| sh4 (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b3 | 920.5 kt | 5,641.0 kt | [tiedostoluettelo] |
| sparc64 (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b2 | 813.5 kt | 27,865.0 kt | [tiedostoluettelo] |
| x32 (epävirallinen siirros) | 1.2.0+4713+dfsg-5+b2 | 887.1 kt | 5,310.0 kt | [tiedostoluettelo] |