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Paketti: progressivemauve (1.2.0+4713+dfsg-5 ja muut)

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multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Muut pakettiin progressivemauve liittyvät paketit

  • depends
  • recommends
  • suggests
  • enhances

Imuroi progressivemauve

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Versio Paketin koko Koko asennettuna Tiedostot
alpha (epävirallinen siirros) 1.2.0+4713+dfsg-5+b2 892.3 kt6,441.0 kt [tiedostoluettelo]
amd64 1.2.0+4713+dfsg-5+b3 850.6 kt5,393.0 kt [tiedostoluettelo]
arm64 1.2.0+4713+dfsg-5+b3 791.1 kt5,774.0 kt [tiedostoluettelo]
armel 1.2.0+4713+dfsg-5+b3 671.7 kt3,966.0 kt [tiedostoluettelo]
armhf 1.2.0+4713+dfsg-5+b3 668.8 kt3,070.0 kt [tiedostoluettelo]
hppa (epävirallinen siirros) 1.2.0+4713+dfsg-5+b3 939.2 kt5,325.0 kt [tiedostoluettelo]
i386 1.2.0+4713+dfsg-5+b3 842.1 kt5,254.0 kt [tiedostoluettelo]
ia64 (epävirallinen siirros) 1.2.0+4713+dfsg-5+b2 1,091.3 kt9,489.0 kt [tiedostoluettelo]
m68k (epävirallinen siirros) 1.2.0+4713+dfsg-5+b3 811.2 kt5,262.0 kt [tiedostoluettelo]
mips64el 1.2.0+4713+dfsg-5+b3 823.7 kt6,838.0 kt [tiedostoluettelo]
ppc64 (epävirallinen siirros) 1.2.0+4713+dfsg-5+b2 852.6 kt7,313.0 kt [tiedostoluettelo]
ppc64el 1.2.0+4713+dfsg-5+b3 877.5 kt6,863.0 kt [tiedostoluettelo]
riscv64 1.2.0+4713+dfsg-5+b3 939.3 kt4,687.0 kt [tiedostoluettelo]
s390x 1.2.0+4713+dfsg-5+b3 729.4 kt5,366.0 kt [tiedostoluettelo]
sh4 (epävirallinen siirros) 1.2.0+4713+dfsg-5+b3 920.5 kt5,641.0 kt [tiedostoluettelo]
sparc64 (epävirallinen siirros) 1.2.0+4713+dfsg-5+b2 813.5 kt27,865.0 kt [tiedostoluettelo]
x32 (epävirallinen siirros) 1.2.0+4713+dfsg-5+b2 887.1 kt5,310.0 kt [tiedostoluettelo]