Package: murasaki-mpi (1.68.6-14)

Links for murasaki-mpi

Debian Resources:

Download Source Package murasaki:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [murasaki.dna.bio.keio.ac.jp]

Similar packages:

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Other Packages Related to murasaki-mpi

depends

recommends

suggests

enhances

dep: libboost-filesystem1.83.0 (>= 1.83.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libmpich12

Shared libraries for MPICH
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: murasaki-common

homology detection tool across multiple large genomes (common files)

Download murasaki-mpi

Download for all available architectures
Architecture	Package Size	Installed Size	Files
armel	492.4 kB	3,433.0 kB	[list of files]