Paket: murasaki-mpi (1.68.6-14)

Links für murasaki-mpi

Debian-Ressourcen:

Quellcode-Paket murasaki herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [murasaki.dna.bio.keio.ac.jp]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

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erweitert

dep: libboost-filesystem1.83.0 (>= 1.83.0)

Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++
dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams-Bibliothek
dep: libc6 (>= 2.38)

GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC Support-Bibliothek
dep: libmpich12

Shared libraries for MPICH
dep: libstdc++6 (>= 14)

GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
dep: murasaki-common

homology detection tool across multiple large genomes (common files)

murasaki-mpi herunterladen

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