Package: bwa (0.7.17-8~0exp and others)

Links for bwa

Debian Resources:

Download Source Package bwa:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Carlos Borroto (QA Page)
Ognyan Kulev (QA Page)
Michael R. Crusoe (QA Page)

External Resources:

Homepage [bio-bwa.sourceforge.net]

Similar packages:

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

Other Packages Related to bwa

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.36) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.36) [ia64]
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: perl

Larry Wall's Practical Extraction and Report Language

sug: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Download bwa

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.17-8~0exp	222.1 kB	577.0 kB	[list of files]
amd64	0.7.17-8~0exp	207.2 kB	452.0 kB	[list of files]
arm64	0.7.17-8~0exp	188.8 kB	448.0 kB	[list of files]
armel	0.7.17-8~0exp	190.6 kB	431.0 kB	[list of files]
armhf	0.7.17-8~0exp	190.1 kB	319.0 kB	[list of files]
hppa (unofficial port)	0.7.17-8~0exp	225.9 kB	512.0 kB	[list of files]
i386	0.7.17-8~0exp	231.7 kB	523.0 kB	[list of files]
ia64 (unofficial port)	0.7.17-8~0exp	291.1 kB	962.0 kB	[list of files]
m68k (unofficial port)	0.7.17-8~0exp	203.9 kB	471.0 kB	[list of files]
mips64el	0.7.17-8~0exp	201.2 kB	527.0 kB	[list of files]
ppc64 (unofficial port)	0.7.17-8~0exp	216.9 kB	576.0 kB	[list of files]
ppc64el	0.7.17-8~0exp	226.8 kB	576.0 kB	[list of files]
riscv64	0.7.17-8~0exp+b1	214.5 kB	376.0 kB	[list of files]
s390x	0.7.17-8~0exp	190.3 kB	464.0 kB	[list of files]
sh4 (unofficial port)	0.7.17-8~0exp	272.9 kB	448.0 kB	[list of files]
sparc64 (unofficial port)	0.7.17-8~0exp	182.5 kB	1,092.0 kB	[list of files]
x32 (unofficial port)	0.7.17-8~0exp	218.3 kB	471.0 kB	[list of files]