[ Source: sga ]
Package: sga (0.10.15-5)
Links for sga
Debian Resources:
Download Source Package sga:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Michael R. Crusoe (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Other Packages Related to sga
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.0) [amd64, arm64, mips64el, ppc64el]
- Package not available
- dep: libgcc1 (>= 1:3.5) [armel, armhf]
- dep: libgcc1 (>= 1:4.2) [mipsel]
- dep: libgcc1 (>= 1:7) [i386]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: abyss (>= 2.0.2-1)
- de novo, parallel, sequence assembler for short reads
Download sga
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 815.0 kB | 2,443.0 kB | [list of files] |
| arm64 | 591.0 kB | 1,747.0 kB | [list of files] |
| armel | 573.9 kB | 1,710.0 kB | [list of files] |
| armhf | 603.8 kB | 1,258.0 kB | [list of files] |
| i386 | 878.4 kB | 2,634.0 kB | [list of files] |
| mips64el | 750.3 kB | 3,008.0 kB | [list of files] |
| mipsel | 788.6 kB | 2,954.0 kB | [list of files] |
| ppc64el | 677.1 kB | 2,239.0 kB | [list of files] |