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[ Quellcode: progressivemauve  ]

Paket: progressivemauve (1.2.0+4713+dfsg-5 und andere)

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multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

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Download für alle verfügbaren Architekturen
Architektur Version Paketgröße Größe (installiert) Dateien
amd64 1.2.0+4713+dfsg-5+b1 849,1 kB5.581,0 kB [Liste der Dateien]
arm64 1.2.0+4713+dfsg-5+b1 796,5 kB5.054,0 kB [Liste der Dateien]
armel 1.2.0+4713+dfsg-5+b1 651,6 kB3.950,0 kB [Liste der Dateien]
armhf 1.2.0+4713+dfsg-5+b1 646,6 kB2.990,0 kB [Liste der Dateien]
i386 1.2.0+4713+dfsg-5+b1 838,8 kB5.370,0 kB [Liste der Dateien]
mips64el 1.2.0+4713+dfsg-5+b1 811,6 kB6.117,0 kB [Liste der Dateien]
mipsel 1.2.0+4713+dfsg-5+b1 835,7 kB6.059,0 kB [Liste der Dateien]
ppc64el 1.2.0+4713+dfsg-5+b1 886,8 kB7.375,0 kB [Liste der Dateien]
s390x 1.2.0+4713+dfsg-5+b1 736,0 kB5.594,0 kB [Liste der Dateien]