Paket: jellyfish1 (1.1.11-5)
Links für jellyfish1
Debian-Ressourcen:
Quellcode-Paket jellyfish1 herunterladen:
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Shaun Jackman (QS-Seite)
- Andreas Tille (QS-Seite)
Externe Ressourcen:
- Homepage [www.cbcb.umd.edu]
Ähnliche Pakete:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.
Andere Pakete mit Bezug zu jellyfish1
|
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [nicht amd64, arm64, ppc64el]
-
- dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, i386]
- GCC Support-Bibliothek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
-
- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
- dep: libstdc++6 (>= 9) [nicht armel, armhf]
-
- enh: kraken
- assigning taxonomic labels to short DNA sequences
jellyfish1 herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 128,3 kB | 656,0 kB | [Liste der Dateien] |
| arm64 | 128,3 kB | 624,0 kB | [Liste der Dateien] |
| armel | 126,1 kB | 607,0 kB | [Liste der Dateien] |
| armhf | 126,4 kB | 535,0 kB | [Liste der Dateien] |
| i386 | 151,4 kB | 675,0 kB | [Liste der Dateien] |
| mips64el | 116,4 kB | 740,0 kB | [Liste der Dateien] |
| ppc64el | 129,5 kB | 748,0 kB | [Liste der Dateien] |
| s390x | 129,6 kB | 660,0 kB | [Liste der Dateien] |