Paket: chip-seq (1.5.5-3)
Links für chip-seq
Debian-Ressourcen:
Quellcode-Paket chip-seq herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [ccg.epfl.ch]
Ähnliche Pakete:
tools performing common ChIP-Seq data analysis tasks
The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks:
1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore).
Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format.
Andere Pakete mit Bezug zu chip-seq
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- dep: chip-seq-data
- tools performing common ChIP-Seq data analysis tasks (data)
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- dep: libc6 (>= 2.17)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libmath-round-perl
- Perl-Erweiterung für Nummer-Rundung
chip-seq herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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ppc64el | 104,5 kB | 1.040,0 kB | [Liste der Dateien] |