[ Quellcode: centrifuge ]
Paket: centrifuge (1.0.3-11)
Links für centrifuge
Debian-Ressourcen:
Quellcode-Paket centrifuge herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [ccb.jhu.edu]
Ähnliche Pakete:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Andere Pakete mit Bezug zu centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jellyfish
- Zählt k-mere in DNA-Sequenzen
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- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, i386]
- GCC Support-Bibliothek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libstdc++6 (>= 11)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
centrifuge herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 541,3 kB | 1.663,0 kB | [Liste der Dateien] |
| arm64 | 501,1 kB | 1.597,0 kB | [Liste der Dateien] |
| armel | 496,7 kB | 1.653,0 kB | [Liste der Dateien] |
| armhf | 486,7 kB | 1.269,0 kB | [Liste der Dateien] |
| i386 | 552,2 kB | 1.813,0 kB | [Liste der Dateien] |
| mips64el | 525,8 kB | 1.894,0 kB | [Liste der Dateien] |
| ppc64el | 564,0 kB | 1.853,0 kB | [Liste der Dateien] |