[ buster ]
[ Source: tophat ]
Package: tophat (2.1.1+dfsg1-2 and others)
Links for tophat
Debian Resources:
Download Source Package tophat:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Carlos Borroto (QA Page)
- Alexandre Mestiashvili (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [ccb.jhu.edu]
Similar packages:
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
Other Packages Related to tophat
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- dep: libc6 (>= 2.15) [amd64]
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also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
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- dep: libgcc1 (>= 1:3.0)
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- dep: libstdc++6 (>= 5.2)
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- dep: python
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- dep: samtools (>= 1.5)
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- dep: zlib1g (>= 1:1.2.3.3)
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- sug: cufflinks
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Download tophat
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.1.1+dfsg1-2+b1 | 654.2 kB | 3,832.0 kB | [list of files] |
| arm64 | 2.1.1+dfsg1-2+b1 | 591.7 kB | 3,567.0 kB | [list of files] |