Package: samtools (1.16.1-1)

Links for samtools

Debian Resources:

Download Source Package samtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.htslib.org]

Similar packages:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libhts3 (>= 1.16)

C library for high-throughput sequencing data formats
dep: libncurses6 (>= 6)

shared libraries for terminal handling
dep: libtinfo6 (>= 6)

shared low-level terminfo library for terminal handling
dep: zlib1g (>= 1:1.1.4) [not armel, armhf, i386, mipsel]

compression library - runtime

dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, i386, mipsel]

sug: cwltool

Common Workflow Language reference implementation

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Architecture	Package Size	Installed Size	Files
amd64	592.4 kB	1,304.0 kB	[list of files]
arm64	566.4 kB	1,580.0 kB	[list of files]
armel	558.8 kB	1,573.0 kB	[list of files]
armhf	561.4 kB	1,445.0 kB	[list of files]
i386	622.1 kB	1,417.0 kB	[list of files]
mips64el	572.9 kB	1,729.0 kB	[list of files]
mipsel	581.2 kB	1,659.0 kB	[list of files]
ppc64el	614.7 kB	1,836.0 kB	[list of files]
s390x	566.6 kB	1,332.0 kB	[list of files]