Пакет: jellyfish (2.3.1-3 и други)

Връзки за jellyfish

Ресурси за Debian:

Изтегляне на пакет-източник jellyfish.

Отговорници:

Външни препратки:

Начална страница [www.genome.umd.edu]

Подобни пакети:

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Други пакети, свързани с jellyfish

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (= 2.3.1-3+b6)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3

Изтегляне на jellyfish

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
ppc64el	2.3.1-3+b6	745,6 кБ	2 895,0 кБ	[списък на файловете]