Paketti: jellyfish (2.3.1-3 ja muut)

Links for jellyfish

Debian-palvelut:

Imuroi lähdekoodipaketti jellyfish:

Ylläpitäjät:

External Resources:

Kotisivu [www.genome.umd.edu]

Samankaltaisia paketteja:

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Muut pakettiin jellyfish liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.38)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (= 2.3.1-3+b6)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 14)

GNU standardi C++ -kirjasto, versio 3

Imuroi jellyfish

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
ppc64el	2.3.1-3+b6	745.6 kt	2,895.0 kt	[tiedostoluettelo]