Пакет: python-cogent (1.9-14)

Връзки за python-cogent

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Изтегляне на пакет-източник python-cogent.

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Външни препратки:

Начална страница [pycogent.org]

Подобни пакети:

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Етикети: Biology: Proteins, Software Development: Python Development, Библиотеки, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::python, interface::commandline, Role: Development Library, Program, Purpose: use::analysing, use::comparing

Други пакети, свързани с python-cogent

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb

dep: libc6 (>= 2.17) [arm64]

dep: libc6 (>= 2.4) [armhf, i386]
dep: python

interactive high-level object-oriented language (Python2 version)

dep: python (<< 2.8)

dep: python (>= 2.7~)
dep: python-matplotlib

Python based plotting system in a style similar to Matlab
dep: python-numpy (>= 1:1.16.0~rc1)

Numerical Python adds a fast array facility to the Python language
dep: python-numpy-abi9

виртуален пакет, предлаган от python-numpy

rec: blast2

transitional dummy package to ncbi-blast+-legacy
rec: bwa [amd64]

Burrows-Wheeler Aligner
rec: cd-hit

suite of programs designed to quickly group sequences
rec: clearcut

extremely efficient phylogenetic tree reconstruction
rec: dialign

Segment-based multiple sequence alignment
rec: muscle

Multiple alignment program of protein sequences

sug: cdbfasta

Constant DataBase indexing and retrieval tools for multi-FASTA files
sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
sug: infernal [amd64, i386]

inference of RNA secondary structural alignments
sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mothur

sequence analysis suite for research on microbiota
sug: parsinsert

Parsimonious Insertion of unclassified sequences into phylogenetic trees
sug: python-cogent-doc

docs for python-cogent
sug: raxml [amd64, i386]

Randomized Axelerated Maximum Likelihood of phylogenetic trees
sug: rdp-classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
sug: rtax

Classification of sequence reads of 16S ribosomal RNA gene

Изтегляне на python-cogent

Изтегляне за всички налични архитектури
Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	2 424,4 кБ	7 794,0 кБ	[списък на файловете]
arm64	2 378,8 кБ	7 680,0 кБ	[списък на файловете]
armhf	2 383,5 кБ	7 349,0 кБ	[списък на файловете]
i386	2 394,6 кБ	7 765,0 кБ	[списък на файловете]