[ ソース: python-cogent ]
パッケージ: python-cogent (1.9-14)
python-cogent に関するリンク
Debian の資源:
python-cogent ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [pycogent.org]
類似のパッケージ:
framework for genomic biology
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:
* controlling third-party applications, * devising workflows; querying databases, * conducting novel probabilistic analyses of biological sequence evolution, and * generating publication quality graphics.It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.
その他の python-cogent 関連パッケージ
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- dep: libc6 (>= 2.14) [amd64]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
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- dep: python
- 対話式の高レベルオブジェクト指向言語 (Python2 バージョン)
- dep: python (<< 2.8)
- dep: python (>= 2.7~)
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- dep: python-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python-numpy (>= 1:1.16.0~rc1)
- Numerical Python - Python 言語に高速な配列操作機能を追加
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- dep: python-numpy-abi9
- 以下のパッケージによって提供される仮想パッケージです: python-numpy
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- rec: blast2
- transitional dummy package to ncbi-blast+-legacy
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- rec: bwa [amd64]
- Burrows-Wheeler Aligner
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- rec: cd-hit
- suite of programs designed to quickly group sequences
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- rec: clearcut
- extremely efficient phylogenetic tree reconstruction
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- rec: dialign
- Segment-based multiple sequence alignment
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- rec: muscle
- タンパク質配列のマルチプルアライメントプログラム
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: clustalw
- global multiple nucleotide or peptide sequence alignment
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- sug: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- sug: infernal [amd64, i386]
- inference of RNA secondary structural alignments
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mothur
- 微生物の研究のための配列解析スイート
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- sug: parsinsert
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
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- sug: python-cogent-doc
- docs for python-cogent
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- sug: raxml [amd64, i386]
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: rdp-classifier
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
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- sug: rtax
- Classification of sequence reads of 16S ribosomal RNA gene