套件：sra-toolkit（3.0.9+dfsg-7 以及其他的）
sra-toolkit 的相關連結
Debian 的資源：
下載原始碼套件 sra-sdk：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Charles Plessy (QA 頁面)
- Andreas Tille (QA 頁面)
- Aaron M. Ucko (QA 頁面)
外部的資源：
- 主頁 [github.com]
相似套件：
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
Other tools distributed in this package are:
abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
其他與 sra-toolkit 有關的套件
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- dep: libabsl20230802 (>= 20230802.0-1) [arm64]
- extensions to the C++ standard library
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- dep: libbz2-1.0 [除 amd64]
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.16) [x32]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.38) [除 x32]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 4.5) [arm64]
-
- dep: libhdf5-103-1t64 [除 x32]
- HDF5 C runtime files - serial version
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- dep: libmagic1t64 (>= 5.12) [除 x32]
- Recognize the type of data in a file using "magic" numbers - library
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- dep: libncbi-vdb3 (>= 3.0.2+dfsg) [arm64]
- libraries for using data in the INSDC Sequence Read Archives
- dep: libncbi-vdb3 (>= 3.0.9+dfsg) [amd64]
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- dep: libncbi-wvdb3 (>= 3.0.2+dfsg) [arm64]
- virtual layer update module of ncbi-vdb library
- dep: libncbi-wvdb3 (>= 3.0.9+dfsg) [amd64]
-
- dep: libre2-11-absl20230802 [arm64]
- 本虛擬套件由這些套件填實： libre2-11
-
- dep: libssl3t64 (>= 3.0.0) [arm64]
- Secure Sockets Layer toolkit - shared libraries
-
- dep: libstdc++6 (>= 14) [除 x32]
- GNU Standard C++ Library v3
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- dep: libxml2 (>= 2.6.27) [x32]
- GNOME XML library
- dep: libxml2 (>= 2.7.4) [除 x32]
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- dep: sra-toolkit-libs0 [x32]
- Libraries for the SRA Toolkit
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- dep: zlib1g (>= 1:1.1.4) [x32]
- 壓縮函式庫 - 跑程式時用(runtime)
- dep: zlib1g (>= 1:1.2.2) [除 x32]
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- rec: med-config
- Debian Med general config package