[ 原始碼： sga ]
套件：sga（0.10.15-7 以及其他的）
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
其他與 sga 有關的套件
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- dep: libbamtools2.4.0 [hppa, ppc64, sparc64]
- 套件暫時不可用
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- dep: libbamtools2.5.1 [sh4]
- 套件暫時不可用
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- dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [除 hppa, ppc64, sh4, sparc64]
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.23) [hppa, ppc64, sparc64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.27) [sh4]
- dep: libc6 (>= 2.34) [除 alpha, hppa, ia64, ppc64, sh4, sparc64]
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- dep: libc6.1 (>= 2.33) [ia64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.34) [alpha]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el, x32]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
- dep: libgcc-s1 (>= 7) [i386]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgcc1 (>= 1:3.0) [ppc64]
- 套件暫時不可用
- dep: libgcc1 (>= 1:3.4) [sh4, sparc64]
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- dep: libgcc4 (>= 4.1.1) [hppa]
- 套件暫時不可用
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- dep: libgomp1 (>= 4.9) [hppa, ppc64, sh4, sparc64]
- GCC OpenMP (GOMP) support library
- dep: libgomp1 (>= 6) [除 hppa, ppc64, sh4, sparc64]
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- dep: libstdc++6 (>= 11) [除 alpha, hppa, ppc64, riscv64, sh4, sparc64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [alpha, riscv64]
- dep: libstdc++6 (>= 5.2) [hppa, ppc64, sh4, sparc64]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: perl [除 hppa, ppc64, sh4, sparc64]
- Larry Wall's Practical Extraction and Report Language
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- dep: python [hppa, ppc64, sh4, sparc64]
- 套件暫時不可用
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- dep: python-pysam [hppa, ppc64, sh4, sparc64]
- 套件暫時不可用
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- dep: python-ruffus [hppa, ppc64, sh4, sparc64]
- 套件暫時不可用
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- dep: python3 [除 hppa, ppc64, sh4, sparc64]
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam [除 hppa, ppc64, sh4, sparc64]
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus [除 hppa, ppc64, sh4, sparc64]
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: abyss [除 sh4]
- de novo, parallel, sequence assembler for short reads
- rec: abyss (>= 2.0.2-1) [sh4]
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- sug: abyss (>= 1.5.2-2)
- de novo, parallel, sequence assembler for short reads
下載 sga
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| alpha （非官方移植版） | 0.10.15-7 | 755。4 kB | 2，753。0 kB | [檔案列表] |
| amd64 | 0.10.15-7+b1 | 812。5 kB | 2，432。0 kB | [檔案列表] |
| arm64 | 0.10.15-7+b1 | 580。5 kB | 1，792。0 kB | [檔案列表] |
| armel | 0.10.15-7+b1 | 564。3 kB | 1，727。0 kB | [檔案列表] |
| armhf | 0.10.15-7+b1 | 582。9 kB | 1，279。0 kB | [檔案列表] |
| hppa （非官方移植版） | 0.10.14-2 | 977。9 kB | 2，993。0 kB | [檔案列表] |
| i386 | 0.10.15-7+b1 | 876。3 kB | 2，607。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 0.10.15-7+b1 | 1，025。2 kB | 4，829。0 kB | [檔案列表] |
| m68k （非官方移植版） | 0.10.15-7+b1 | 775。3 kB | 2，407。0 kB | [檔案列表] |
| mips64el | 0.10.15-7+b1 | 745。3 kB | 3，062。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 0.10.14-2 | 735。4 kB | 2，620。0 kB | [檔案列表] |
| ppc64el | 0.10.15-7+b1 | 692。6 kB | 2，304。0 kB | [檔案列表] |
| riscv64 | 0.10.15-7+b1 | 663。5 kB | 1，496。0 kB | [檔案列表] |
| sh4 （非官方移植版） | 0.10.15-4 | 1，052。2 kB | 2，782。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 0.10.14-2 | 770。0 kB | 2，627。0 kB | [檔案列表] |
| x32 （非官方移植版） | 0.10.15-7+b1 | 817。2 kB | 2，291。0 kB | [檔案列表] |