[ 原始碼: r-bioc-shortread ]
套件:r-bioc-shortread(1.62.0-1 以及其他的)
r-bioc-shortread 的相關連結
Debian 的資源:
下載原始碼套件 r-bioc-shortread:
- [r-bioc-shortread_1.62.0-1.dsc]
- [r-bioc-shortread_1.62.0.orig.tar.gz]
- [r-bioc-shortread_1.62.0-1.debian.tar.xz]
維護小組:
外部的資源:
- 主頁 [bioconductor.org]
相似套件:
GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.
其他與 r-bioc-shortread 有關的套件
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.7) [alpha]
-
- dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, m68k, sparc64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 4.2) [ia64]
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
-
- dep: libgcc1 (>= 1:3.0) [sparc64]
- 套件暫時不可用
-
- dep: libgcc2 (>= 4.2.1) [m68k]
- 套件暫時不可用
-
- dep: libgomp1 (>= 4.2.1) [m68k, sparc64]
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 11) [除 m68k, sparc64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 5.2) [m68k, sparc64]
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: r-api-3.4 [m68k]
- 套件暫時不可用
-
- dep: r-api-3.5 [sparc64]
- 套件暫時不可用
-
- dep: r-api-4.0 [除 m68k, sparc64]
- 本虛擬套件由這些套件填實: r-base-core
-
- dep: r-api-bioc-3.16 [x32]
- 套件暫時不可用
-
- dep: r-api-bioc-3.18 [hppa, ia64, sh4]
- 套件暫時不可用
-
- dep: r-api-bioc-3.19 [除 hppa, ia64, m68k, sh4, sparc64, x32]
- 本虛擬套件由這些套件填實: r-bioc-biocgenerics
-
- dep: r-api-bioc-3.8 [sparc64]
- 套件暫時不可用
-
- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R core of statistical computation and graphics system
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
-
- dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]
- base functions for Bioconductor
- dep: r-bioc-biobase (>= 2.64.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biocgenerics (>= 0.23.3) [hppa, ia64, m68k, sh4, sparc64, x32]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.50.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]
- BioConductor facilities for parallel evaluation
- dep: r-bioc-biocparallel (>= 1.38.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-biostrings (>= 2.72.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]
- BioConductor utilities for manipulating chromosome identifiers
- dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-genomeinfodb (>= 1.40.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, sparc64, x32]
- BioConductor representation and manipulation of short genomic alignments
- dep: r-bioc-genomicalignments (>= 1.40.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
- dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]
-
- dep: r-bioc-genomicranges (>= 1.21.6) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-genomicranges (>= 1.56.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, sparc64, x32]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.3.7) [m68k]
- dep: r-bioc-iranges (>= 2.38.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-pwalign (>= 1.0.0-2~0exp1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
- Perform pairwise sequence alignments
-
- dep: r-bioc-rhtslib [hppa, ia64, sh4, x32]
- HTSlib high-throughput sequencing library as GNU R package
- dep: r-bioc-rhtslib (>= 3.0.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-rsamtools (>= 2.20.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-s4vectors (>= 0.13.8) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, sparc64, x32]
- dep: r-bioc-s4vectors (>= 0.42.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-xvector [hppa, ia64, sh4, x32]
- BioConductor representation and manpulation of external sequences
- dep: r-bioc-xvector (>= 0.44.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]
- (Virtual) zlibbioc Bioconductor package
- dep: r-bioc-zlibbioc (>= 1.50.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
-
- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
-
- dep: r-cran-latticeextra
- GNU R package of additional graphical displays based on lattice
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
-
- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]
- standard styles for vignettes and other Bioconductor documents
- sug: r-bioc-biocstyle (>= 2.32.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-bioc-biomart [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
- sug: r-bioc-biomart (>= 2.60.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
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- sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R tools for making and manipulating transcript centric annotations
- sug: r-bioc-genomicfeatures (>= 1.56.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
-
- sug: r-cran-knitr [除 hppa, ia64, m68k, sh4, sparc64, x32]
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-runit [除 sparc64]
- GNU R package providing unit testing framework
下載 r-bioc-shortread
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|---|
alpha (非官方移植版) | 1.62.0-1 | 5,095。0 kB | 8,253。0 kB | [檔案列表] |
amd64 | 1.62.0-1 | 5,095。4 kB | 8,206。0 kB | [檔案列表] |
arm64 | 1.62.0-1 | 5,091。8 kB | 8,252。0 kB | [檔案列表] |
hppa (非官方移植版) | 1.60.0-2 | 5,064。8 kB | 7,527。0 kB | [檔案列表] |
ia64 (非官方移植版) | 1.60.0-2 | 5,072。7 kB | 7,620。0 kB | [檔案列表] |
m68k (非官方移植版) | 1.36.0-1 | 4,189。1 kB | 6,069。0 kB | [檔案列表] |
mips64el | 1.62.0-1 | 5,088。5 kB | 8,266。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 1.62.0-1 | 5,099。6 kB | 8,320。0 kB | [檔案列表] |
ppc64el | 1.62.0-1 | 5,097。7 kB | 8,316。0 kB | [檔案列表] |
riscv64 | 1.62.0-1 | 5,094。1 kB | 8,186。0 kB | [檔案列表] |
s390x | 1.62.0-1 | 5,094。2 kB | 8,216。0 kB | [檔案列表] |
sh4 (非官方移植版) | 1.60.0-2 | 5,066。6 kB | 7,494。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 1.40.0-1 | 4,896。8 kB | 7,343。0 kB | [檔案列表] |
x32 (非官方移植版) | 1.56.1-1 | 5,043。0 kB | 7,479。0 kB | [檔案列表] |