套件:examl(3.0.22-5)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
其他與 examl 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha, ia64, sh4, x32]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [x32]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgomp1 (>= 4.2.1) [sparc64]
- GCC OpenMP (GOMP) support library
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- dep: libopenmpi3t64 (>= 4.1.6)
- high performance message passing library -- shared library
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- dep: openmpi-bin
- high performance message passing library -- binaries
下載 examl
硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|
alpha (非官方移植版) | 834。3 kB | 1,919。0 kB | [檔案列表] |
amd64 | 931。6 kB | 5,969。0 kB | [檔案列表] |
arm64 | 780。5 kB | 1,663。0 kB | [檔案列表] |
armel | 796。9 kB | 1,872。0 kB | [檔案列表] |
armhf | 785。1 kB | 1,520。0 kB | [檔案列表] |
hppa (非官方移植版) | 813。5 kB | 1,750。0 kB | [檔案列表] |
i386 | 1,078。8 kB | 7,035。0 kB | [檔案列表] |
ia64 (非官方移植版) | 955。5 kB | 2,818。0 kB | [檔案列表] |
m68k (非官方移植版) | 763。5 kB | 1,780。0 kB | [檔案列表] |
mips64el | 816。6 kB | 1,811。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 836。8 kB | 1,919。0 kB | [檔案列表] |
ppc64el | 845。9 kB | 1,919。0 kB | [檔案列表] |
riscv64 | 840。2 kB | 1,591。0 kB | [檔案列表] |
s390x | 818。0 kB | 1,995。0 kB | [檔案列表] |
sh4 (非官方移植版) | 889。8 kB | 1,852。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 826。9 kB | 3,716。0 kB | [檔案列表] |
x32 (非官方移植版) | 782。7 kB | 1,744。0 kB | [檔案列表] |