全部搜尋項
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 原始碼: ea-utils  ]

套件:ea-utils(1.1.2+dfsg-5)

ea-utils 的相關連結

Screenshot

Debian 的資源:

下載原始碼套件 ea-utils

維護小組:

外部的資源:

相似套件:

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.
 * fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.
 * fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.
 * varcall
Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

其他與 ea-utils 有關的套件

  • 依賴
  • 推薦
  • 建議
  • 增強

下載 ea-utils

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 219。8 kB724。0 kB [檔案列表]
arm64 153。1 kB524。0 kB [檔案列表]
armhf 150。1 kB408。0 kB [檔案列表]
i386 228。1 kB736。0 kB [檔案列表]