[ 原始碼： yanosim ]
套件：yanosim（0.1-3）
read simulator nanopore DRS datasets
Yanosim has three options:
1. yanosim model:
Creates an model of mismatches, insertions and deletions based on an alignment of nanopore DRS reads to a reference. Reads should be aligned to a transcriptome i.e. without spliced alignment, using minimap2. They should have the cs tag.2. yanosim quantify:
Quantify the number of reads mapping to each transcript in a reference, so that the right number of reads can be simulated.3. yanosim simulate:
Given a model created using yanosim model, and per-transcript read counts created using yanosim simulate, simulate error-prone long-reads from the given fasta file.
其他與 yanosim 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3