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[ 原始碼: jellyfish  ]

套件:libjellyfish-2.0-2(2.3.0-10)

libjellyfish-2.0-2 的相關連結

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count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

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硬體架構 套件大小 安裝後大小 檔案
amd64 63。6 kB198。0 kB [檔案列表]
arm64 59。5 kB189。0 kB [檔案列表]
armel 55。5 kB165。0 kB [檔案列表]
armhf 55。9 kB137。0 kB [檔案列表]
i386 70。1 kB197。0 kB [檔案列表]
mips64el 60。6 kB226。0 kB [檔案列表]
ppc64el 69。0 kB286。0 kB [檔案列表]